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Chemtool http://ruby.chemie.uni-freiburg.de/[..]tin/chemtool/ 7576x
Chemtool is a GTK+-based 2D chemical structure editor for X11. Drawings can be exported in XFig format for further annotation, or as Postscript files (using xfig's companion program transfig). A set of sample molecular structure drawings is included in the archive.
 
KMol http://www.idiom.com/[..]omi/kmol.html 5888x
KMol calculates molecular weights and elemental compositon of compounds from their chemical formula. KMol supports user defined groups, unlimited number of nested subgroups, multicomponent compounds, global and per-user symbol definitions.
 
Jmol http://jmol.sourceforge.net/ 2727x
Jmol is a Free, Open Source molecule viewer and editor. It is a measurement tool for chemical scientists.
 
Chemistry Development Kit http://cdk.sourceforge.net/ 2628x
The Chemistry Development Kit (CDK) jest zestawem klas javy do obliczeń chemicznych.
 
JOELib http://www-ra.informatik.uni-tuebingen.de/[..]ib/index.html 2375x
JOELib is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, and conversion of different chemical file formats.
 
BKchem http://zirael.org/[..]em/index.html 2201x
BKchem is a free chemical drawing program. BKchem is written in Python, an interpreted and very nice programming language.
 
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